cat: new email = --email=lilipeng@gmail.com, lilipeng@gmail.com: No such file or directory -------->STATISTIC outframes: 10. Read file 1 Read file 2 Added chain A to list Added chain B to list 8661 atoms in frame 0 Found gap in A before 440 Didn't recognize MG Saved sequence for 0 A Found gap in B before 47 Found gap in B before 369 Saved sequence for 0 B 8661 atoms left in frame 0 after culling. 8661 atoms in frame 1 Saved sequence for 1 A Found gap in B before 47 Found gap in B before 369 Saved sequence for 1 B Found gap in A before 440 Didn't recognize MG Saved sequence for 1 A 8661 atoms left in frame 1 after culling. Copying chain A to temporary array Aligning sequences for chain A 879 positions in alignment Gap in frame1 at index 0 Gap in frame1 at index 1 Gap in frame1 at index 2 Gap in frame1 at index 3 Gap in frame1 at index 4 Gap in frame1 at index 5 Gap in frame1 at index 6 Gap in frame1 at index 7 Gap in frame1 at index 8 Gap in frame1 at index 9 Gap in frame1 at index 10 Gap in frame1 at index 11 Gap in frame1 at index 12 Gap in frame1 at index 13 Gap in frame1 at index 14 Gap in frame1 at index 15 Gap in frame1 at index 16 Gap in frame1 at index 17 Gap in frame1 at index 18 Gap in frame1 at index 19 Gap in frame1 at index 20 Gap in frame1 at index 21 Gap in frame1 at index 22 Gap in frame1 at index 23 Gap in frame1 at index 24 Gap in frame1 at index 25 Gap in frame1 at index 26 Gap in frame1 at index 27 Gap in frame1 at index 28 Gap in frame1 at index 29 Gap in frame1 at index 30 Gap in frame1 at index 31 Gap in frame1 at index 32 Gap in frame1 at index 33 Gap in frame1 at index 34 Gap in frame1 at index 35 Gap in frame1 at index 36 Gap in frame1 at index 37 Gap in frame1 at index 38 Gap in frame1 at index 39 Gap in frame1 at index 40 Gap in frame1 at index 41 Gap in frame1 at index 42 Gap in frame1 at index 43 Gap in frame1 at index 44 Gap in frame1 at index 45 Gap in frame1 at index 46 Gap in frame1 at index 47 Gap in frame1 at index 48 Gap in frame1 at index 49 Gap in frame1 at index 50 Gap in frame1 at index 51 Gap in frame1 at index 52 Gap in frame1 at index 53 Gap in frame1 at index 54 Gap in frame1 at index 55 Gap in frame1 at index 56 Gap in frame1 at index 57 Gap in frame1 at index 58 Gap in frame1 at index 59 Gap in frame1 at index 60 Gap in frame1 at index 61 Gap in frame1 at index 62 Gap in frame1 at index 63 Gap in frame1 at index 64 Gap in frame1 at index 65 Gap in frame1 at index 66 Gap in frame1 at index 67 Gap in frame1 at index 68 Gap in frame1 at index 69 Gap in frame1 at index 70 Gap in frame1 at index 71 Gap in frame1 at index 72 Gap in frame1 at index 73 Gap in frame1 at index 74 Gap in frame1 at index 75 Gap in frame1 at index 76 Gap in frame1 at index 77 Gap in frame1 at index 78 Gap in frame1 at index 79 Gap in frame1 at index 80 Gap in frame1 at index 81 Gap in frame1 at index 82 Gap in frame1 at index 83 Gap in frame1 at index 84 Gap in frame1 at index 85 Gap in frame1 at index 86 Gap in frame1 at index 87 Gap in frame1 at index 88 Gap in frame1 at index 89 Gap in frame1 at index 90 Gap in frame1 at index 91 Gap in frame1 at index 92 Gap in frame1 at index 93 Gap in frame1 at index 94 Gap in frame1 at index 95 Gap in frame1 at index 96 Gap in frame1 at index 97 Gap in frame1 at index 98 Gap in frame1 at index 99 Gap in frame1 at index 100 Gap in frame1 at index 101 Gap in frame1 at index 102 Gap in frame1 at index 103 Gap in frame1 at index 104 Gap in frame1 at index 105 Gap in frame1 at index 106 Gap in frame1 at index 107 Gap in frame1 at index 108 Gap in frame1 at index 109 Gap in frame1 at index 110 Gap in frame1 at index 111 Gap in frame1 at index 112 Gap in frame1 at index 113 Gap in frame1 at index 114 Gap in frame1 at index 115 Gap in frame1 at index 116 Gap in frame1 at index 117 Gap in frame1 at index 118 Gap in frame1 at index 119 Gap in frame1 at index 120 Gap in frame1 at index 121 Gap in frame1 at index 122 Gap in frame1 at index 123 Gap in frame1 at index 124 Gap in frame1 at index 125 Gap in frame1 at index 126 Gap in frame1 at index 127 Gap in frame1 at index 128 Gap in frame1 at index 129 Gap in frame1 at index 130 Gap in frame1 at index 131 Gap in frame1 at index 132 Gap in frame1 at index 133 Gap in frame1 at index 134 Gap in frame1 at index 135 Gap in frame1 at index 136 Gap in frame1 at index 137 Gap in frame1 at index 138 Gap in frame1 at index 139 Gap in frame1 at index 140 Gap in frame1 at index 141 Gap in frame1 at index 142 Gap in frame1 at index 143 Gap in frame1 at index 144 Gap in frame1 at index 145 Gap in frame1 at index 146 Gap in frame1 at index 147 Gap in frame1 at index 148 Gap in frame1 at index 149 Gap in frame1 at index 150 Gap in frame1 at index 151 Gap in frame1 at index 152 Gap in frame1 at index 153 Gap in frame1 at index 154 Gap in frame1 at index 155 Gap in frame1 at index 156 Gap in frame1 at index 157 Gap in frame1 at index 158 Gap in frame1 at index 159 Gap in frame1 at index 160 Gap in frame1 at index 161 Gap in frame1 at index 162 Gap in frame1 at index 163 Gap in frame1 at index 164 Gap in frame1 at index 165 Gap in frame1 at index 166 Gap in frame1 at index 167 Gap in frame1 at index 168 Gap in frame1 at index 169 Gap in frame1 at index 170 Gap in frame1 at index 171 Gap in frame1 at index 172 Gap in frame1 at index 173 Gap in frame1 at index 174 Gap in frame1 at index 175 Gap in frame1 at index 176 Gap in frame1 at index 177 Gap in frame1 at index 178 Gap in frame1 at index 179 Gap in frame1 at index 180 Gap in frame1 at index 181 Gap in frame1 at index 182 Gap in frame1 at index 183 Gap in frame1 at index 184 Gap in frame1 at index 185 Gap in frame1 at index 186 Gap in frame1 at index 187 Gap in frame1 at index 188 Gap in frame1 at index 189 Gap in frame1 at index 190 Gap in frame1 at index 191 Gap in frame1 at index 192 Gap in frame1 at index 193 Gap in frame1 at index 194 Gap in frame1 at index 195 Gap in frame1 at index 196 Gap in frame1 at index 197 Gap in frame1 at index 198 Gap in frame1 at index 199 Gap in frame1 at index 200 Gap in frame1 at index 201 Gap in frame1 at index 202 Gap in frame1 at index 203 Gap in frame1 at index 204 Gap in frame1 at index 205 Gap in frame1 at index 206 Gap in frame1 at index 207 Gap in frame1 at index 208 Gap in frame1 at index 209 Gap in frame1 at index 210 Gap in frame1 at index 211 Gap in frame1 at index 212 Gap in frame1 at index 213 Gap in frame1 at index 214 Gap in frame1 at index 215 Gap in frame1 at index 216 Gap in frame1 at index 217 Gap in frame1 at index 218 Gap in frame1 at index 219 Gap in frame1 at index 220 Gap in frame1 at index 221 Gap in frame1 at index 222 Gap in frame1 at index 223 Gap in frame1 at index 224 Gap in frame1 at index 225 Gap in frame1 at index 226 Gap in frame1 at index 227 Gap in frame1 at index 228 Gap in frame1 at index 229 Gap in frame1 at index 230 Gap in frame1 at index 231 Gap in frame1 at index 232 Gap in frame1 at index 233 Gap in frame1 at index 234 Gap in frame1 at index 235 Gap in frame1 at index 236 Gap in frame1 at index 237 Gap in frame1 at index 238 Gap in frame1 at index 239 Gap in frame1 at index 240 Gap in frame1 at index 241 Gap in frame1 at index 242 Gap in frame1 at index 243 Gap in frame1 at index 244 Gap in frame1 at index 245 Gap in frame1 at index 246 Gap in frame1 at index 247 Gap in frame1 at index 248 Gap in frame1 at index 249 Gap in frame1 at index 250 Gap in frame1 at index 251 Gap in frame1 at index 252 Gap in frame1 at index 253 Gap in frame1 at index 254 Gap in frame1 at index 255 Gap in frame1 at index 256 Gap in frame1 at index 257 Gap in frame1 at index 258 Gap in frame1 at index 259 Gap in frame1 at index 260 Gap in frame1 at index 261 Gap in frame1 at index 262 Gap in frame1 at index 263 Gap in frame1 at index 264 Gap in frame1 at index 265 Gap in frame1 at index 266 Gap in frame1 at index 267 Gap in frame1 at index 268 Gap in frame1 at index 269 Gap in frame1 at index 270 Gap in frame1 at index 271 Gap in frame1 at index 272 Gap in frame1 at index 273 Gap in frame1 at index 274 Gap in frame1 at index 275 Gap in frame1 at index 276 Gap in frame1 at index 277 Gap in frame1 at index 278 Gap in frame1 at index 279 Gap in frame1 at index 280 Gap in frame1 at index 281 Gap in frame1 at index 282 Gap in frame1 at index 283 Gap in frame1 at index 284 Gap in frame1 at index 285 Gap in frame1 at index 286 Gap in frame1 at index 287 Gap in frame1 at index 288 Gap in frame1 at index 289 Gap in frame1 at index 290 Gap in frame1 at index 291 Gap in frame1 at index 292 Gap in frame1 at index 293 Gap in frame1 at index 294 Gap in frame1 at index 295 Gap in frame1 at index 296 Gap in frame1 at index 297 Gap in frame1 at index 298 Gap in frame1 at index 299 Gap in frame1 at index 300 Gap in frame1 at index 301 Gap in frame1 at index 302 Gap in frame1 at index 303 Gap in frame1 at index 304 Gap in frame1 at index 305 Gap in frame1 at index 306 Gap in frame1 at index 307 Gap in frame1 at index 308 Gap in frame1 at index 309 Gap in frame1 at index 310 Gap in frame1 at index 311 Gap in frame1 at index 312 Gap in frame1 at index 313 Gap in frame1 at index 314 Gap in frame1 at index 315 Gap in frame1 at index 316 Gap in frame1 at index 317 Gap in frame1 at index 318 Gap in frame1 at index 319 Gap in frame1 at index 320 Gap in frame1 at index 321 Gap in frame1 at index 322 Gap in frame1 at index 323 Gap in frame1 at index 324 Gap in frame1 at index 325 Gap in frame1 at index 326 Gap in frame1 at index 327 Gap in frame1 at index 328 Gap in frame1 at index 329 Gap in frame1 at index 330 Gap in frame1 at index 331 Gap in frame1 at index 332 Gap in frame1 at index 333 Gap in frame1 at index 334 Gap in frame1 at index 335 Gap in frame1 at index 336 Gap in frame1 at index 337 Gap in frame1 at index 338 Gap in frame1 at index 339 Gap in frame1 at index 340 Gap in frame1 at index 341 Gap in frame1 at index 342 Gap in frame1 at index 343 Gap in frame1 at index 344 Gap in frame1 at index 345 Gap in frame1 at index 346 Gap in frame1 at index 347 Gap in frame1 at index 348 Gap in frame1 at index 349 Gap in frame1 at index 350 Gap in frame1 at index 351 Gap in frame1 at index 352 Gap in frame1 at index 353 Gap in frame1 at index 354 Gap in frame1 at index 355 Gap in frame1 at index 356 Gap in frame1 at index 357 Gap in frame1 at index 358 Gap in frame1 at index 359 Gap in frame1 at index 360 Gap in frame1 at index 361 Gap in frame1 at index 362 Gap in frame1 at index 363 Gap in frame1 at index 364 Gap in frame1 at index 365 Gap in frame1 at index 366 Gap in frame1 at index 367 Gap in frame1 at index 368 Gap in frame1 at index 369 Gap in frame1 at index 370 Gap in frame1 at index 371 Gap in frame1 at index 372 Gap in frame1 at index 373 Gap in frame1 at index 374 Gap in frame1 at index 375 Gap in frame1 at index 376 Gap in frame1 at index 377 Gap in frame1 at index 378 Gap in frame1 at index 379 Gap in frame1 at index 380 Gap in frame1 at index 381 Gap in frame1 at index 382 Gap in frame1 at index 383 Gap in frame1 at index 384 Gap in frame1 at index 385 Gap in frame1 at index 386 Gap in frame1 at index 387 Gap in frame1 at index 388 Gap in frame1 at index 389 Gap in frame1 at index 390 Gap in frame1 at index 391 Gap in frame1 at index 392 Gap in frame1 at index 393 Gap in frame1 at index 394 Gap in frame1 at index 395 Gap in frame1 at index 396 Gap in frame1 at index 397 Gap in frame1 at index 398 Gap in frame1 at index 399 Gap in frame1 at index 400 Gap in frame1 at index 401 Gap in frame1 at index 402 Gap in frame1 at index 403 Gap in frame1 at index 404 Gap in frame1 at index 405 Gap in frame1 at index 406 Gap in frame1 at index 407 Gap in frame1 at index 408 Gap in frame1 at index 409 Gap in frame1 at index 410 Gap in frame1 at index 411 Gap in frame1 at index 412 Gap in frame1 at index 413 Gap in frame1 at index 414 Gap in frame1 at index 415 Gap in frame1 at index 416 Gap in frame1 at index 417 Gap in frame1 at index 418 Gap in frame1 at index 419 Gap in frame1 at index 420 Gap in frame1 at index 421 Gap in frame1 at index 422 Gap in frame1 at index 423 Gap in frame1 at index 424 Gap in frame1 at index 425 Gap in frame1 at index 426 Gap in frame1 at index 427 Gap in frame1 at index 428 Gap in frame1 at index 429 Gap in frame1 at index 430 Gap in frame1 at index 431 Gap in frame1 at index 432 Gap in frame1 at index 433 Gap in frame1 at index 434 Gap in frame1 at index 435 Gap in frame1 at index 436 Gap in frame1 at index 437 Gap in frame1 at index 438 Unknown residue at 440 (M/X) Unknown residue at 441 (R/X) Unknown residue at 442 (E/X) Unknown residue at 443 (C/X) Unknown residue at 444 (I/X) Unknown residue at 445 (S/X) Unknown residue at 446 (I/X) Unknown residue at 447 (H/X) Unknown residue at 448 (V/X) Unknown residue at 449 (G/X) Unknown residue at 450 (Q/X) Unknown residue at 451 (A/X) Unknown residue at 452 (G/X) Unknown residue at 453 (V/X) Unknown residue at 454 (Q/X) Unknown residue at 455 (I/X) Unknown residue at 456 (G/X) Unknown residue at 457 (N/X) Unknown residue at 458 (A/X) Unknown residue at 459 (C/X) Unknown residue at 460 (W/X) Unknown residue at 461 (E/X) Unknown residue at 462 (L/X) Unknown residue at 463 (Y/X) Unknown residue at 464 (C/X) Unknown residue at 465 (L/X) Unknown residue at 466 (E/X) Unknown residue at 467 (H/X) Unknown residue at 468 (G/X) Unknown residue at 469 (I/X) Unknown residue at 470 (Q/X) Unknown residue at 471 (P/X) Unknown residue at 472 (D/X) Unknown residue at 473 (G/X) Unknown residue at 474 (Q/X) Unknown residue at 475 (M/X) Unknown residue at 476 (P/X) Unknown residue at 477 (S/X) Unknown residue at 478 (D/X) Unknown residue at 479 (K/X) Unknown residue at 480 (T/X) Unknown residue at 481 (I/X) Unknown residue at 482 (G/X) Unknown residue at 483 (G/X) Unknown residue at 484 (G/X) Unknown residue at 485 (D/X) Unknown residue at 486 (D/X) Unknown residue at 487 (S/X) Unknown residue at 488 (F/X) Unknown residue at 489 (N/X) Unknown residue at 490 (T/X) Unknown residue at 491 (F/X) Unknown residue at 492 (F/X) Unknown residue at 493 (S/X) Unknown residue at 494 (E/X) Unknown residue at 495 (T/X) Unknown residue at 496 (G/X) Unknown residue at 497 (A/X) Unknown residue at 498 (G/X) Unknown residue at 499 (K/X) Unknown residue at 500 (H/X) Unknown residue at 501 (V/X) Unknown residue at 502 (P/X) Unknown residue at 503 (R/X) Unknown residue at 504 (A/X) Unknown residue at 505 (V/X) Unknown residue at 506 (F/X) Unknown residue at 507 (V/X) Unknown residue at 508 (D/X) Unknown residue at 509 (L/X) Unknown residue at 510 (E/X) Unknown residue at 511 (P/X) Unknown residue at 512 (T/X) Unknown residue at 513 (V/X) Unknown residue at 514 (I/X) Unknown residue at 515 (D/X) Unknown residue at 516 (E/X) Unknown residue at 517 (V/X) Unknown residue at 518 (R/X) Unknown residue at 519 (T/X) Unknown residue at 520 (G/X) Unknown residue at 521 (T/X) Unknown residue at 522 (Y/X) Unknown residue at 523 (R/X) Unknown residue at 524 (Q/X) Unknown residue at 525 (L/X) Unknown residue at 526 (F/X) Unknown residue at 527 (H/X) Unknown residue at 528 (P/X) Unknown residue at 529 (E/X) Unknown residue at 530 (Q/X) Unknown residue at 531 (L/X) Unknown residue at 532 (I/X) Unknown residue at 533 (T/X) Unknown residue at 534 (G/X) Unknown residue at 535 (K/X) Unknown residue at 536 (E/X) Unknown residue at 537 (D/X) Unknown residue at 538 (A/X) Unknown residue at 539 (A/X) Unknown residue at 540 (N/X) Unknown residue at 541 (N/X) Unknown residue at 542 (Y/X) Unknown residue at 543 (A/X) Unknown residue at 544 (R/X) Unknown residue at 545 (G/X) Unknown residue at 546 (H/X) Unknown residue at 547 (Y/X) Unknown residue at 548 (T/X) Unknown residue at 549 (I/X) Unknown residue at 550 (G/X) Unknown residue at 551 (K/X) Unknown residue at 552 (E/X) Unknown residue at 553 (I/X) Unknown residue at 554 (I/X) Unknown residue at 555 (D/X) Unknown residue at 556 (L/X) Unknown residue at 557 (V/X) Unknown residue at 558 (L/X) Unknown residue at 559 (D/X) Unknown residue at 560 (R/X) Unknown residue at 561 (I/X) Unknown residue at 562 (R/X) Unknown residue at 563 (K/X) Unknown residue at 564 (L/X) Unknown residue at 565 (A/X) Unknown residue at 566 (D/X) Unknown residue at 567 (Q/X) Unknown residue at 568 (C/X) Unknown residue at 569 (T/X) Unknown residue at 570 (G/X) Unknown residue at 571 (L/X) Unknown residue at 572 (Q/X) Unknown residue at 573 (G/X) Unknown residue at 574 (F/X) Unknown residue at 575 (S/X) Unknown residue at 576 (V/X) Unknown residue at 577 (F/X) Unknown residue at 578 (H/X) Unknown residue at 579 (S/X) Unknown residue at 580 (F/X) Unknown residue at 581 (G/X) Unknown residue at 582 (G/X) Unknown residue at 583 (G/X) Unknown residue at 584 (T/X) Unknown residue at 585 (G/X) Unknown residue at 586 (S/X) Unknown residue at 587 (G/X) Unknown residue at 588 (F/X) Unknown residue at 589 (T/X) Unknown residue at 590 (S/X) Unknown residue at 591 (L/X) Unknown residue at 592 (L/X) Unknown residue at 593 (M/X) Unknown residue at 594 (E/X) Unknown residue at 595 (R/X) Unknown residue at 596 (L/X) Unknown residue at 597 (S/X) Unknown residue at 598 (V/X) Unknown residue at 599 (D/X) Unknown residue at 600 (Y/X) Unknown residue at 601 (G/X) Unknown residue at 602 (K/X) Unknown residue at 603 (K/X) Unknown residue at 604 (S/X) Unknown residue at 605 (K/X) Unknown residue at 606 (L/X) Unknown residue at 607 (E/X) Unknown residue at 608 (F/X) Unknown residue at 609 (S/X) Unknown residue at 610 (I/X) Unknown residue at 611 (Y/X) Unknown residue at 612 (P/X) Unknown residue at 613 (A/X) Unknown residue at 614 (P/X) Unknown residue at 615 (Q/X) Unknown residue at 616 (V/X) Unknown residue at 617 (S/X) Unknown residue at 618 (T/X) Unknown residue at 619 (A/X) Unknown residue at 620 (V/X) Unknown residue at 621 (V/X) Unknown residue at 622 (E/X) Unknown residue at 623 (P/X) Unknown residue at 624 (Y/X) Unknown residue at 625 (N/X) Unknown residue at 626 (S/X) Unknown residue at 627 (I/X) Unknown residue at 628 (L/X) Unknown residue at 629 (T/X) Unknown residue at 630 (T/X) Unknown residue at 631 (H/X) Unknown residue at 632 (T/X) Unknown residue at 633 (T/X) Unknown residue at 634 (L/X) Unknown residue at 635 (E/X) Unknown residue at 636 (H/X) Unknown residue at 637 (S/X) Unknown residue at 638 (D/X) Unknown residue at 639 (C/X) Unknown residue at 640 (A/X) Unknown residue at 641 (F/X) Unknown residue at 642 (M/X) Unknown residue at 643 (V/X) Unknown residue at 644 (D/X) Unknown residue at 645 (N/X) Unknown residue at 646 (E/X) Unknown residue at 647 (A/X) Unknown residue at 648 (I/X) Unknown residue at 649 (Y/X) Unknown residue at 650 (D/X) Unknown residue at 651 (I/X) Unknown residue at 652 (C/X) Unknown residue at 653 (R/X) Unknown residue at 654 (R/X) Unknown residue at 655 (N/X) Unknown residue at 656 (L/X) Unknown residue at 657 (D/X) Unknown residue at 658 (I/X) Unknown residue at 659 (E/X) Unknown residue at 660 (R/X) Unknown residue at 661 (P/X) Unknown residue at 662 (T/X) Unknown residue at 663 (Y/X) Unknown residue at 664 (T/X) Unknown residue at 665 (N/X) Unknown residue at 666 (L/X) Unknown residue at 667 (N/X) Unknown residue at 668 (R/X) Unknown residue at 669 (L/X) Unknown residue at 670 (I/X) Unknown residue at 671 (G/X) Unknown residue at 672 (Q/X) Unknown residue at 673 (I/X) Unknown residue at 674 (V/X) Unknown residue at 675 (S/X) Unknown residue at 676 (S/X) Unknown residue at 677 (I/X) Unknown residue at 678 (T/X) Unknown residue at 679 (A/X) Unknown residue at 680 (S/X) Unknown residue at 681 (L/X) Unknown residue at 682 (R/X) Unknown residue at 683 (F/X) Unknown residue at 684 (D/X) Unknown residue at 685 (G/X) Unknown residue at 686 (A/X) Unknown residue at 687 (L/X) Unknown residue at 688 (N/X) Unknown residue at 689 (V/X) Unknown residue at 690 (D/X) Unknown residue at 691 (L/X) Unknown residue at 692 (T/X) Unknown residue at 693 (E/X) Unknown residue at 694 (F/X) Unknown residue at 695 (Q/X) Unknown residue at 696 (T/X) Unknown residue at 697 (N/X) Unknown residue at 698 (L/X) Unknown residue at 699 (V/X) Unknown residue at 700 (P/X) Unknown residue at 701 (Y/X) Unknown residue at 702 (P/X) Unknown residue at 703 (R/X) Unknown residue at 704 (G/X) Unknown residue at 705 (H/X) Unknown residue at 706 (F/X) Unknown residue at 707 (P/X) Unknown residue at 708 (L/X) Unknown residue at 709 (A/X) Unknown residue at 710 (T/X) Unknown residue at 711 (Y/X) Unknown residue at 712 (A/X) Unknown residue at 713 (P/X) Unknown residue at 714 (V/X) Unknown residue at 715 (I/X) Unknown residue at 716 (S/X) Unknown residue at 717 (A/X) Unknown residue at 718 (E/X) Unknown residue at 719 (K/X) Unknown residue at 720 (A/X) Unknown residue at 721 (Y/X) Unknown residue at 722 (H/X) Unknown residue at 723 (E/X) Unknown residue at 724 (Q/X) Unknown residue at 725 (L/X) Unknown residue at 726 (S/X) Unknown residue at 727 (V/X) Unknown residue at 728 (A/X) Unknown residue at 729 (E/X) Unknown residue at 730 (I/X) Unknown residue at 731 (T/X) Unknown residue at 732 (N/X) Unknown residue at 733 (A/X) Unknown residue at 734 (C/X) Unknown residue at 735 (F/X) Unknown residue at 736 (E/X) Unknown residue at 737 (P/X) Unknown residue at 738 (A/X) Unknown residue at 739 (N/X) Unknown residue at 740 (Q/X) Unknown residue at 741 (M/X) Unknown residue at 742 (V/X) Unknown residue at 743 (K/X) Unknown residue at 744 (C/X) Unknown residue at 745 (D/X) Unknown residue at 746 (P/X) Unknown residue at 747 (R/X) Unknown residue at 748 (H/X) Unknown residue at 749 (G/X) Unknown residue at 750 (K/X) Unknown residue at 751 (Y/X) Unknown residue at 752 (M/X) Unknown residue at 753 (A/X) Unknown residue at 754 (C/X) Unknown residue at 755 (C/X) Unknown residue at 756 (L/X) Unknown residue at 757 (L/X) Unknown residue at 758 (Y/X) Unknown residue at 759 (R/X) Unknown residue at 760 (G/X) Unknown residue at 761 (D/X) Unknown residue at 762 (V/X) Unknown residue at 763 (V/X) Unknown residue at 764 (P/X) Unknown residue at 765 (K/X) Unknown residue at 766 (D/X) Unknown residue at 767 (V/X) Unknown residue at 768 (N/X) Unknown residue at 769 (A/X) Unknown residue at 770 (A/X) Unknown residue at 771 (I/X) Unknown residue at 772 (A/X) Unknown residue at 773 (T/X) Unknown residue at 774 (I/X) Unknown residue at 775 (K/X) Unknown residue at 776 (T/X) Unknown residue at 777 (K/X) Unknown residue at 778 (R/X) Unknown residue at 779 (T/X) Unknown residue at 780 (I/X) Unknown residue at 781 (Q/X) Unknown residue at 782 (F/X) Unknown residue at 783 (V/X) Unknown residue at 784 (D/X) Unknown residue at 785 (W/X) Unknown residue at 786 (C/X) Unknown residue at 787 (P/X) Unknown residue at 788 (T/X) Unknown residue at 789 (G/X) Unknown residue at 790 (F/X) Unknown residue at 791 (K/X) Unknown residue at 792 (V/X) Unknown residue at 793 (G/X) Unknown residue at 794 (I/X) Unknown residue at 795 (N/X) Unknown residue at 796 (Y/X) Unknown residue at 797 (E/X) Unknown residue at 798 (P/X) Unknown residue at 799 (P/X) Unknown residue at 800 (T/X) Unknown residue at 801 (V/X) Unknown residue at 802 (V/X) Unknown residue at 803 (P/X) Unknown residue at 804 (G/X) Unknown residue at 805 (G/X) Unknown residue at 806 (D/X) Unknown residue at 807 (L/X) Unknown residue at 808 (A/X) Unknown residue at 809 (K/X) Unknown residue at 810 (V/X) Unknown residue at 811 (Q/X) Unknown residue at 812 (R/X) Unknown residue at 813 (A/X) Unknown residue at 814 (V/X) Unknown residue at 815 (C/X) Unknown residue at 816 (M/X) Unknown residue at 817 (L/X) Unknown residue at 818 (S/X) Unknown residue at 819 (N/X) Unknown residue at 820 (T/X) Unknown residue at 821 (T/X) Unknown residue at 822 (A/X) Unknown residue at 823 (I/X) Unknown residue at 824 (A/X) Unknown residue at 825 (E/X) Unknown residue at 826 (A/X) Unknown residue at 827 (W/X) Unknown residue at 828 (A/X) Unknown residue at 829 (R/X) Unknown residue at 830 (L/X) Unknown residue at 831 (D/X) Unknown residue at 832 (H/X) Unknown residue at 833 (K/X) Unknown residue at 834 (F/X) Unknown residue at 835 (D/X) Unknown residue at 836 (L/X) Unknown residue at 837 (M/X) Unknown residue at 838 (Y/X) Unknown residue at 839 (A/X) Unknown residue at 840 (K/X) Unknown residue at 841 (R/X) Unknown residue at 842 (A/X) Unknown residue at 843 (F/X) Unknown residue at 844 (V/X) Unknown residue at 845 (H/X) Unknown residue at 846 (W/X) Unknown residue at 847 (Y/X) Unknown residue at 848 (V/X) Unknown residue at 849 (G/X) Unknown residue at 850 (E/X) Unknown residue at 851 (G/X) Unknown residue at 852 (M/X) Unknown residue at 853 (E/X) Unknown residue at 854 (E/X) Unknown residue at 855 (G/X) Unknown residue at 856 (E/X) Unknown residue at 857 (F/X) Unknown residue at 858 (S/X) Unknown residue at 859 (E/X) Unknown residue at 860 (A/X) Unknown residue at 861 (R/X) Unknown residue at 862 (E/X) Unknown residue at 863 (D/X) Unknown residue at 864 (M/X) Unknown residue at 865 (A/X) Unknown residue at 866 (A/X) Unknown residue at 867 (L/X) Unknown residue at 868 (E/X) Unknown residue at 869 (K/X) Unknown residue at 870 (D/X) Unknown residue at 871 (Y/X) Unknown residue at 872 (E/X) Unknown residue at 873 (E/X) Unknown residue at 874 (V/X) Unknown residue at 875 (G/X) Unknown residue at 876 (V/X) Unknown residue at 877 (D/X) Unknown residue at 878 (S/X) Consensus structure for chain A done. Chain B identical. No alignment needed. copying chain B from frame 0 copying chain B from frame 1 Cleaning up frame 0 with CNS. . . Cleaning up frame 1 with CNS. . . -------->STATISTIC nchains: 2. -------->STATISTIC chains: AB. Fitting qf0.pdb and qf1.pdb -------->STATISTIC RMSOverall: 2.8456 . -------->STATISTIC nresidues: 427. -------->STATISTIC natoms: 3340. -------->STATISTIC PRIVATE: Y. PyMOL(TM) Molecular Graphics System, Version 0.97. Copyright (C) 2004 by DeLano Scientific LLC. All Rights Reserved. Created by Warren L. DeLano, Ph.D. Other Major Authors and Contributors: Ralf W. Grosse-Kunstleve, Ph.D. PyMOL is user-supported open-source software. Although most versions are freely available, PyMOL is not in the public domain. If PyMOL is helpful in your work or study, then please volunteer support for our ongoing campaign to create open and affordable software for molecular research. Updates and other information can be found at "http://www.pymol.org". Please cite PyMOL in publications and presentations: Warren L. DeLano "The PyMOL Molecular Graphics System." DeLano Scientific LLC, San Carlos, CA, USA. http://www.pymol.org Enter "help" for a list of commands. Enter "help " for information on a specific command. Hit ESC anytime to toggle between text and graphics. Command mode. No graphics front end. Detected 4 CPUs. Enabled multithreaded rendering. PyMOL>load ff0.pdb, mov Executive: object "mov" created. PyMOL>load ff1.pdb, mov CmdLoad: "ff1.pdb" appended into object "mov", state 2. PyMOL>load ff2.pdb, mov CmdLoad: "ff2.pdb" appended into object "mov", state 3. PyMOL>load ff3.pdb, mov CmdLoad: "ff3.pdb" appended into object "mov", state 4. PyMOL>load ff4.pdb, mov CmdLoad: "ff4.pdb" appended into object "mov", state 5. PyMOL>load ff5.pdb, mov CmdLoad: "ff5.pdb" appended into object "mov", state 6. PyMOL>load ff6.pdb, mov CmdLoad: "ff6.pdb" appended into object "mov", state 7. PyMOL>load ff7.pdb, mov CmdLoad: "ff7.pdb" appended into object "mov", state 8. PyMOL>load ff8.pdb, mov CmdLoad: "ff8.pdb" appended into object "mov", state 9. PyMOL>load ff9.pdb, mov CmdLoad: "ff9.pdb" appended into object "mov", state 10. PyMOL>zoom mov PyMOL>set cartoon_cylindrical_helices, 1 Setting: cartoon_cylindrical_helices set to on. PyMOL>set ray_trace_frames = 1 Setting: ray_trace_frames set to on. PyMOL>set antialias = 1 Setting: antialias set to 1. PyMOL>hide lines, (all) PyMOL>show cartoon, (all) PyMOL>color white, elem c Executive: Colored 2092 atoms. PyMOL>util.rainbow (all) PyMOL>mset 1 x5 -10 10 x5 -1 PyMOL>viewport 480, 480 PyMOL>mpng cartoon. Ray: total time: 2.80 sec. = 1284.6 frames/hour. (2.80 sec. accum.) MoviePNG: wrote cartoon.0001.png Ray: total time: 2.42 sec. = 1486.8 frames/hour. (5.22 sec. accum.) MoviePNG: wrote cartoon.0002.png Ray: total time: 2.72 sec. = 1325.4 frames/hour. (7.94 sec. accum.) MoviePNG: wrote cartoon.0003.png Ray: total time: 2.64 sec. = 1363.8 frames/hour. (10.58 sec. accum.) MoviePNG: wrote cartoon.0004.png Ray: total time: 2.87 sec. = 1254.1 frames/hour. (13.45 sec. accum.) MoviePNG: wrote cartoon.0005.png Ray: total time: 2.76 sec. = 1304.4 frames/hour. (16.21 sec. accum.) MoviePNG: wrote cartoon.0006.png Ray: total time: 2.77 sec. = 1299.0 frames/hour. (18.98 sec. accum.) MoviePNG: wrote cartoon.0007.png Ray: total time: 2.59 sec. = 1391.7 frames/hour. (21.57 sec. accum.) MoviePNG: wrote cartoon.0008.png Ray: total time: 2.79 sec. = 1289.3 frames/hour. (24.36 sec. accum.) MoviePNG: wrote cartoon.0009.png Ray: total time: 2.94 sec. = 1223.5 frames/hour. (27.30 sec. accum.) MoviePNG: wrote cartoon.0010.png Ray: total time: 2.56 sec. = 1405.6 frames/hour. (29.86 sec. accum.) MoviePNG: wrote cartoon.0011.png Ray: total time: 2.70 sec. = 1331.4 frames/hour. (32.57 sec. accum.) MoviePNG: wrote cartoon.0012.png Ray: total time: 2.84 sec. = 1269.0 frames/hour. (35.41 sec. accum.) MoviePNG: wrote cartoon.0013.png Ray: total time: 2.81 sec. = 1280.1 frames/hour. (38.22 sec. accum.) MoviePNG: wrote cartoon.0014.png Ray: total time: 2.81 sec. = 1281.7 frames/hour. (41.03 sec. accum.) MoviePNG: wrote cartoon.0015.png Ray: total time: 2.70 sec. = 1332.4 frames/hour. (43.73 sec. accum.) MoviePNG: wrote cartoon.0016.png Ray: total time: 2.98 sec. = 1207.0 frames/hour. (46.71 sec. accum.) MoviePNG: wrote cartoon.0017.png Ray: total time: 2.81 sec. = 1282.6 frames/hour. (49.52 sec. accum.) MoviePNG: wrote cartoon.0018.png Ray: total time: 2.80 sec. = 1286.8 frames/hour. (52.31 sec. accum.) MoviePNG: wrote cartoon.0019.png Ray: total time: 2.54 sec. = 1418.3 frames/hour. (54.85 sec. accum.) MoviePNG: wrote cartoon.0020.png Ray: total time: 2.87 sec. = 1253.0 frames/hour. (57.73 sec. accum.) MoviePNG: wrote cartoon.0021.png Ray: total time: 2.82 sec. = 1276.1 frames/hour. (60.55 sec. accum.) MoviePNG: wrote cartoon.0022.png Ray: total time: 2.60 sec. = 1383.5 frames/hour. (63.15 sec. accum.) MoviePNG: wrote cartoon.0023.png Ray: total time: 2.81 sec. = 1281.4 frames/hour. (65.96 sec. accum.) MoviePNG: wrote cartoon.0024.png Ray: total time: 2.74 sec. = 1316.1 frames/hour. (68.69 sec. accum.) MoviePNG: wrote cartoon.0025.png Ray: total time: 2.95 sec. = 1220.8 frames/hour. (71.64 sec. accum.) MoviePNG: wrote cartoon.0026.png Ray: total time: 2.81 sec. = 1280.4 frames/hour. (74.45 sec. accum.) MoviePNG: wrote cartoon.0027.png Ray: total time: 2.46 sec. = 1462.6 frames/hour. (76.92 sec. accum.) MoviePNG: wrote cartoon.0028.png PyMOL>bg_color white PyMOL>viewport 240, 240 PyMOL>mpng micon0. Ray: total time: 1.41 sec. = 2554.4 frames/hour. (78.33 sec. accum.) MoviePNG: wrote micon0.0001.png Ray: total time: 1.54 sec. = 2341.0 frames/hour. (79.86 sec. accum.) MoviePNG: wrote micon0.0002.png Ray: total time: 1.49 sec. = 2410.9 frames/hour. (81.36 sec. accum.) MoviePNG: wrote micon0.0003.png Ray: total time: 1.62 sec. = 2221.3 frames/hour. (82.98 sec. accum.) MoviePNG: wrote micon0.0004.png Ray: total time: 1.65 sec. = 2179.7 frames/hour. (84.63 sec. accum.) MoviePNG: wrote micon0.0005.png Ray: total time: 1.50 sec. = 2400.7 frames/hour. (86.13 sec. accum.) MoviePNG: wrote micon0.0006.png Ray: total time: 1.82 sec. = 1981.2 frames/hour. (87.95 sec. accum.) MoviePNG: wrote micon0.0007.png Ray: total time: 1.65 sec. = 2180.0 frames/hour. (89.60 sec. accum.) MoviePNG: wrote micon0.0008.png Ray: total time: 1.50 sec. = 2399.2 frames/hour. (91.10 sec. accum.) MoviePNG: wrote micon0.0009.png Ray: total time: 1.41 sec. = 2553.7 frames/hour. (92.51 sec. accum.) MoviePNG: wrote micon0.0010.png Ray: total time: 1.77 sec. = 2034.1 frames/hour. (94.28 sec. accum.) MoviePNG: wrote micon0.0011.png Ray: total time: 1.95 sec. = 1842.7 frames/hour. (96.23 sec. accum.) MoviePNG: wrote micon0.0012.png Ray: total time: 2.27 sec. = 1584.7 frames/hour. (98.50 sec. accum.) MoviePNG: wrote micon0.0013.png Ray: total time: 2.17 sec. = 1657.2 frames/hour. (100.67 sec. accum.) MoviePNG: wrote micon0.0014.png Ray: total time: 1.81 sec. = 1983.9 frames/hour. (102.49 sec. accum.) MoviePNG: wrote micon0.0015.png Ray: total time: 1.62 sec. = 2224.3 frames/hour. (104.11 sec. accum.) MoviePNG: wrote micon0.0016.png Ray: total time: 1.67 sec. = 2154.7 frames/hour. (105.78 sec. accum.) MoviePNG: wrote micon0.0017.png Ray: total time: 1.85 sec. = 1943.9 frames/hour. (107.63 sec. accum.) MoviePNG: wrote micon0.0018.png Ray: total time: 1.72 sec. = 2088.2 frames/hour. (109.35 sec. accum.) MoviePNG: wrote micon0.0019.png Ray: total time: 1.67 sec. = 2159.4 frames/hour. (111.02 sec. accum.) MoviePNG: wrote micon0.0020.png Ray: total time: 1.68 sec. = 2146.8 frames/hour. (112.70 sec. accum.) MoviePNG: wrote micon0.0021.png Ray: total time: 1.59 sec. = 2268.2 frames/hour. (114.29 sec. accum.) MoviePNG: wrote micon0.0022.png Ray: total time: 1.62 sec. = 2227.4 frames/hour. (115.90 sec. accum.) MoviePNG: wrote micon0.0023.png Ray: total time: 1.57 sec. = 2294.9 frames/hour. (117.47 sec. accum.) MoviePNG: wrote micon0.0024.png Ray: total time: 1.80 sec. = 1999.7 frames/hour. (119.27 sec. accum.) MoviePNG: wrote micon0.0025.png Ray: total time: 1.62 sec. = 2228.7 frames/hour. (120.89 sec. accum.) MoviePNG: wrote micon0.0026.png Ray: total time: 1.94 sec. = 1855.5 frames/hour. (122.83 sec. accum.) MoviePNG: wrote micon0.0027.png Ray: total time: 1.69 sec. = 2126.3 frames/hour. (124.52 sec. accum.) MoviePNG: wrote micon0.0028.png PyMOL: normal program termination. 2 [insert SeqHdr.......] before frame 0 1 [load frame..........] frame 0 1 [load frame..........] frame 1 2 [compute Var/Mean....] frame 0 1 [load frame..........] frame 2 2 [compute Var/Mean....] frame 1 2 [compute Var/Mean....] frame 2 1 [load frame..........] frame 3 1 [load frame..........] frame 4 2 [compute Var/Mean....] frame 3 1 [load frame..........] frame 5 2 [compute Var/Mean....] frame 4 1 [load frame..........] frame 6 2 [compute Var/Mean....] frame 5 1 [load frame..........] frame 7 2 [compute Var/Mean....] frame 6 1 [load frame..........] frame 8 1 [load frame..........] frame 9 2 [compute Var/Mean....] frame 7 2 [compute Var/Mean....] frame 8 1 [load frame..........] frame 10 2 [compute Var/Mean....] frame 9 2 [compute Var/Mean....] frame 10 1 [load frame..........] frame 11 1 [load frame..........] frame 12 2 [compute Var/Mean....] frame 11 1 [load frame..........] frame 13 2 [compute Var/Mean....] frame 12 2 [compute Var/Mean....] frame 13 1 [load frame..........] frame 14 1 [load frame..........] frame 15 2 [compute Var/Mean....] frame 14 1 [load frame..........] frame 16 2 [compute Var/Mean....] frame 15 2 [compute Var/Mean....] frame 16 1 [load frame..........] frame 17 1 [load frame..........] frame 18 2 [compute Var/Mean....] frame 17 1 [load frame..........] frame 19 1 [compute Var/Mean....] frame 18 1 [compute Var/Mean....] frame 19 1 [frametype (regular).] frame 0 to 19 2 [encode frame........] frame 0 2 [qscale (constant)...] frame 0 2 [MBType (variance)...] frame 0 2 [FDCT & quantize.....] frame 0 1 [load frame..........] frame 20 1 [load frame..........] frame 21 2 [create bitstream....] frame 0 2 [write bitstream.....] frame 0 ------------------------ (31661 bytes) 2 [decode..............] frame 0 1 [load frame..........] frame 22 2 [encode frame........] frame 5 2 [qscale (constant)...] frame 5 1 [load frame..........] frame 23 2 [MV search...........] -> frame 5 2 [MBType (variance)...] frame 5 2 [FDCT & quantize.....] frame 5 1 [load frame..........] frame 24 2 [create bitstream....] frame 5 1 [load frame..........] frame 25 2 [write bitstream.....] frame 5 ------------------------ (19657 bytes) 2 [decode..............] frame 5 1 [load frame..........] frame 26 2 [encode frame........] frame 1 2 [qscale (constant)...] frame 1 2 [MV search...........] <- frame 1 2 [MV search...........] -> frame 1 1 [load frame..........] frame 27 2 [MBType (variance)...] frame 1 2 [FDCT & quantize.....] frame 1 1 [encode frame........] frame 2 1 [qscale (constant)...] frame 2 1 [MV search...........] <- frame 2 1 [MV search...........] -> frame 2 2 [create bitstream....] frame 1 1 [MBType (variance)...] frame 2 2 [write bitstream.....] frame 1 ------------------------ (7350 bytes) 2 [delete frame........] frame 1 2 [encode frame........] frame 3 1 [FDCT & quantize.....] frame 2 2 [qscale (constant)...] frame 3 2 [MV search...........] <- frame 3 2 [MV search...........] -> frame 3 2 [MBType (variance)...] frame 3 2 [FDCT & quantize.....] frame 3 1 [create bitstream....] frame 2 1 [write bitstream.....] frame 2 ------------------------ (7350 bytes) 1 [delete frame........] frame 2 1 [encode frame........] frame 4 1 [qscale (constant)...] frame 4 1 [MV search...........] <- frame 4 1 [MV search...........] -> frame 4 2 [create bitstream....] frame 3 2 [write bitstream.....] frame 3 ------------------------ (7350 bytes) 2 [delete frame........] frame 3 2 [encode frame........] frame 10 2 [qscale (constant)...] frame 10 2 [MV search...........] -> frame 10 1 [MBType (variance)...] frame 4 1 [FDCT & quantize.....] frame 4 2 [MBType (variance)...] frame 10 2 [FDCT & quantize.....] frame 10 1 [create bitstream....] frame 4 1 [write bitstream.....] frame 4 ------------------------ (7350 bytes) 1 [delete frame........] frame 4 1 [delete frame........] frame 0 1 [compute Var/Mean....] frame 20 1 [compute Var/Mean....] frame 21 1 [compute Var/Mean....] frame 22 2 [create bitstream....] frame 10 1 [decode..............] frame 10 2 [write bitstream.....] frame 10 ------------------------ (26798 bytes) 2 [compute Var/Mean....] frame 23 2 [compute Var/Mean....] frame 24 2 [compute Var/Mean....] frame 25 2 [compute Var/Mean....] frame 26 2 [compute Var/Mean....] frame 27 2 [frametype (regular).] frame 20 to 27 2 [encode frame........] frame 20 2 [qscale (constant)...] frame 20 2 [MBType (variance)...] frame 20 2 [FDCT & quantize.....] frame 20 1 [encode frame........] frame 6 1 [qscale (constant)...] frame 6 1 [MV search...........] <- frame 6 1 [MV search...........] -> frame 6 2 [create bitstream....] frame 20 1 [MBType (variance)...] frame 6 1 [FDCT & quantize.....] frame 6 2 [encode frame........] frame 7 2 [qscale (constant)...] frame 7 2 [MV search...........] <- frame 7 2 [MV search...........] -> frame 7 2 [MBType (variance)...] frame 7 2 [FDCT & quantize.....] frame 7 1 [create bitstream....] frame 6 1 [write bitstream.....] frame 6 ------------------------ (18378 bytes) 1 [delete frame........] frame 6 1 [encode frame........] frame 8 1 [qscale (constant)...] frame 8 1 [MV search...........] <- frame 8 1 [MV search...........] -> frame 8 2 [create bitstream....] frame 7 1 [MBType (variance)...] frame 8 1 [FDCT & quantize.....] frame 8 2 [write bitstream.....] frame 7 ------------------------ (19571 bytes) 2 [delete frame........] frame 7 2 [encode frame........] frame 9 2 [qscale (constant)...] frame 9 2 [MV search...........] <- frame 9 2 [MV search...........] -> frame 9 2 [MBType (variance)...] frame 9 2 [FDCT & quantize.....] frame 9 1 [create bitstream....] frame 8 1 [write bitstream.....] frame 8 ------------------------ (19797 bytes) 1 [delete frame........] frame 8 1 [encode frame........] frame 15 1 [qscale (constant)...] frame 15 1 [MV search...........] -> frame 15 1 [MBType (variance)...] frame 15 1 [FDCT & quantize.....] frame 15 2 [create bitstream....] frame 9 2 [write bitstream.....] frame 9 ------------------------ (18000 bytes) 2 [delete frame........] frame 9 2 [delete frame........] frame 5 2 [decode..............] frame 20 1 [create bitstream....] frame 15 1 [write bitstream.....] frame 15 ------------------------ (26541 bytes) 1 [decode..............] frame 15 2 [encode frame........] frame 25 2 [qscale (constant)...] frame 25 2 [MV search...........] -> frame 25 1 [encode frame........] frame 11 2 [MBType (variance)...] frame 25 2 [FDCT & quantize.....] frame 25 1 [qscale (constant)...] frame 11 1 [MV search...........] <- frame 11 1 [MV search...........] -> frame 11 1 [MBType (variance)...] frame 11 2 [create bitstream....] frame 25 1 [FDCT & quantize.....] frame 11 2 [encode frame........] frame 12 2 [qscale (constant)...] frame 12 2 [MV search...........] <- frame 12 2 [MV search...........] -> frame 12 2 [MBType (variance)...] frame 12 1 [create bitstream....] frame 11 2 [FDCT & quantize.....] frame 12 1 [write bitstream.....] frame 11 ------------------------ (18031 bytes) 1 [delete frame........] frame 11 1 [encode frame........] frame 13 1 [qscale (constant)...] frame 13 1 [MV search...........] <- frame 13 1 [MV search...........] -> frame 13 1 [MBType (variance)...] frame 13 1 [FDCT & quantize.....] frame 13 2 [create bitstream....] frame 12 2 [write bitstream.....] frame 12 ------------------------ (18161 bytes) 2 [delete frame........] frame 12 2 [encode frame........] frame 14 2 [qscale (constant)...] frame 14 2 [MV search...........] <- frame 14 2 [MV search...........] -> frame 14 2 [MBType (variance)...] frame 14 1 [create bitstream....] frame 13 2 [FDCT & quantize.....] frame 14 1 [write bitstream.....] frame 13 ------------------------ (7789 bytes) 1 [delete frame........] frame 13 1 [encode frame........] frame 16 1 [qscale (constant)...] frame 16 1 [MV search...........] <- frame 16 1 [MV search...........] -> frame 16 1 [MBType (variance)...] frame 16 1 [FDCT & quantize.....] frame 16 2 [create bitstream....] frame 14 2 [write bitstream.....] frame 14 ------------------------ (7789 bytes) 2 [write bitstream.....] frame 20 ------------------------ (31547 bytes) 2 [delete frame........] frame 14 2 [delete frame........] frame 10 2 [encode frame........] frame 17 2 [qscale (constant)...] frame 17 2 [MV search...........] <- frame 17 2 [MV search...........] -> frame 17 1 [create bitstream....] frame 16 2 [MBType (variance)...] frame 17 1 [write bitstream.....] frame 16 ------------------------ (7803 bytes) 1 [delete frame........] frame 16 1 [encode frame........] frame 18 2 [FDCT & quantize.....] frame 17 1 [qscale (constant)...] frame 18 1 [MV search...........] <- frame 18 1 [MV search...........] -> frame 18 1 [MBType (variance)...] frame 18 1 [FDCT & quantize.....] frame 18 2 [create bitstream....] frame 17 2 [write bitstream.....] frame 17 ------------------------ (7803 bytes) 2 [delete frame........] frame 17 2 [encode frame........] frame 19 2 [qscale (constant)...] frame 19 2 [MV search...........] <- frame 19 2 [MV search...........] -> frame 19 1 [create bitstream....] frame 18 1 [write bitstream.....] frame 18 ------------------------ (7803 bytes) 1 [delete frame........] frame 18 1 [decode..............] frame 25 2 [MBType (variance)...] frame 19 2 [FDCT & quantize.....] frame 19 1 [encode frame........] frame 21 1 [qscale (constant)...] frame 21 1 [MV search...........] <- frame 21 2 [create bitstream....] frame 19 1 [MV search...........] -> frame 21 2 [write bitstream.....] frame 19 ------------------------ (17071 bytes) 2 [write bitstream.....] frame 25 ------------------------ (27912 bytes) 2 [delete frame........] frame 19 2 [delete frame........] frame 15 2 [encode frame........] frame 22 2 [qscale (constant)...] frame 22 2 [MV search...........] <- frame 22 1 [MBType (variance)...] frame 21 2 [MV search...........] -> frame 22 1 [FDCT & quantize.....] frame 21 2 [MBType (variance)...] frame 22 2 [FDCT & quantize.....] frame 22 1 [create bitstream....] frame 21 1 [write bitstream.....] frame 21 ------------------------ (18517 bytes) 1 [delete frame........] frame 21 1 [encode frame........] frame 23 1 [qscale (constant)...] frame 23 1 [MV search...........] <- frame 23 1 [MV search...........] -> frame 23 2 [create bitstream....] frame 22 2 [write bitstream.....] frame 22 ------------------------ (19782 bytes) 2 [delete frame........] frame 22 2 [encode frame........] frame 24 2 [qscale (constant)...] frame 24 2 [MV search...........] <- frame 24 1 [MBType (variance)...] frame 23 1 [FDCT & quantize.....] frame 23 2 [MV search...........] -> frame 24 2 [MBType (variance)...] frame 24 2 [FDCT & quantize.....] frame 24 1 [create bitstream....] frame 23 1 [write bitstream.....] frame 23 ------------------------ (19846 bytes) 1 [delete frame........] frame 23 1 [encode frame........] frame 27 1 [qscale (constant)...] frame 27 1 [MV search...........] -> frame 27 1 [MBType (variance)...] frame 27 1 [FDCT & quantize.....] frame 27 2 [create bitstream....] frame 24 2 [write bitstream.....] frame 24 ------------------------ (18089 bytes) 2 [delete frame........] frame 24 2 [delete frame........] frame 20 1 [create bitstream....] frame 27 1 [write bitstream.....] frame 27 ------------------------ (23420 bytes) 1 [decode..............] frame 27 1 [encode frame........] frame 26 1 [qscale (constant)...] frame 26 1 [MV search...........] <- frame 26 1 [MV search...........] -> frame 26 1 [MBType (variance)...] frame 26 1 [FDCT & quantize.....] frame 26 1 [delete frame........] frame 27 1 [create bitstream....] frame 26 1 [write bitstream.....] frame 26 ------------------------ (14066 bytes) 1 [delete frame........] frame 26 1 [delete frame........] frame 25 Time for coding (ms): 12417 Time for waiting (ms): 3628 Total time: 16045 user time: 2.17 realtime-factor: 1.87069 mean bitrate is: 3.12563 MBits/sec === GIFMerge Rev 1.33 (C) 1991,1992 by Mark Podlipec Improvements by Rene K. Mueller 1996 Delay: 10 (0.10 secs) Loops: 0 Merging micon0.0001.gif ... Merging micon0.0002.gif ... Merging micon0.0003.gif ... Merging micon0.0004.gif ... Merging micon0.0005.gif ... Merging micon0.0006.gif ... Merging micon0.0007.gif ... Merging micon0.0008.gif ... Merging micon0.0009.gif ... Merging micon0.0010.gif ... Merging micon0.0011.gif ... Merging micon0.0012.gif ... Merging micon0.0013.gif ... Merging micon0.0014.gif ... Merging micon0.0015.gif ... Merging micon0.0016.gif ... Merging micon0.0017.gif ... Merging micon0.0018.gif ... Merging micon0.0019.gif ... Merging micon0.0020.gif ... Merging micon0.0021.gif ... Merging micon0.0022.gif ... Merging micon0.0023.gif ... Merging micon0.0024.gif ... Merging micon0.0025.gif ... Merging micon0.0026.gif ... Merging micon0.0027.gif ... Merging micon0.0028.gif ... PyMOL(TM) Molecular Graphics System, Version 0.97. Copyright (C) 2004 by DeLano Scientific LLC. All Rights Reserved. Created by Warren L. DeLano, Ph.D. Other Major Authors and Contributors: Ralf W. Grosse-Kunstleve, Ph.D. PyMOL is user-supported open-source software. Although most versions are freely available, PyMOL is not in the public domain. If PyMOL is helpful in your work or study, then please volunteer support for our ongoing campaign to create open and affordable software for molecular research. Updates and other information can be found at "http://www.pymol.org". Please cite PyMOL in publications and presentations: Warren L. DeLano "The PyMOL Molecular Graphics System." DeLano Scientific LLC, San Carlos, CA, USA. http://www.pymol.org Enter "help" for a list of commands. Enter "help " for information on a specific command. Hit ESC anytime to toggle between text and graphics. Command mode. No graphics front end. Detected 4 CPUs. Enabled multithreaded rendering. PyMOL>load ff0.pdb Executive: object "ff0" created. PyMOL>viewport 80,80 PyMOL>reset PyMOL>zoom PyMOL>hide lines PyMOL>show cartoon PyMOL>util.rainbow PyMOL>bg_color white PyMOL>set cartoon_cylindrical_helices = 1 Setting: cartoon_cylindrical_helices set to on. PyMOL>set depth_cue = 0 Setting: depth_cue set to off. PyMOL>set fog = 0 Setting: fog set to 0.00000. PyMOL>set ray_trace_fog = 0 Setting: ray_trace_fog set to 0.00000. PyMOL>set antialias = 1 Setting: antialias set to 1. PyMOL>ray Ray: total time: 0.94 sec. = 3814.7 frames/hour. (0.94 sec. accum.) PyMOL>png sicon ScenePNG: wrote 80x80 pixel image to file "sicon.png". PyMOL: normal program termination. DBD::mysql::st execute failed: Can't open file: 'sequence.MYI'. (errno: 145) at /home/molmovdb/server/lib/util.pm line 123. DBD::mysql::st fetchrow_array failed: fetch() without execute() at /home/molmovdb/server/lib/util.pm line 124. DBD::mysql::st execute failed: Can't open file: 'sequence.MYI'. (errno: 145) at /home/molmovdb/server/lib/util.pm line 123. DBD::mysql::st fetchrow_array failed: fetch() without execute() at /home/molmovdb/server/lib/util.pm line 124. DBD::mysql::st execute failed: Can't open file: 'sequence.MYI'. (errno: 145) at /home/molmovdb/server/lib/util.pm line 139. Couldn't execute : select distinct resnum from sequence where mid_ = "b649592-16743" and not isnull(normal_displacement) order by normal_displacement asc limit 1; check 1 select distinct resnum from sequence where mid_ = "b649592-16743" and not isnull(normal_displacement) order by normal_displacement asc limit 1; update stats set private='Y' where mid_="b649592-16743";