Motion in Oligopeptide-binding protein [opbp]

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Classification Known Domain Motion, Hinge Mechanism [D-h-2]

Structures
1JET Complexed with KAK [ PartsList ]
1OLA Complexed with VKPG [ PartsList ]
1OLB Complexed with KKKA
1QKA Complexed with KRK
1QKB Complexed with KVK
1RKM Open [ PartsList ]
2OLB Complexed with KKK [ PartsList ]
2RKM Complexed with KK [ PartsList ]
1JEV [ PartsList ]

Description
Two structures have been solved in closed conformation with peptide bound in deep interdomain cleft.

Particular values describing motion
Creation Date = 19970822
Modification Date = 19970822
Experimental Methods = x (Traditional x-ray)

References
J R Tame, G N Murshudov, E J Dodson, T K Neil, G G Dodson, C F Higgins and A J Wilkinson (1994). The structural basis of sequence-independent peptide binding by OppA protein. Science. 264: 1578-1581. [Medline info for 94261830]

GO terms associated with structures
Molecular functiontransporter activity
Biological processtransport

Morphs

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Best representative
Morph Morph name Structure #1 Structure #2 Residues
Oligo-peptide binding protein 1rkm [ A ] 2rkm [ A ] 517

User-submitted morphs
Morph Morph name Structure #1 Structure #2 Residues
opbp 1ola [ ] 1olb [ ] 517
39274-11907 Oligopeptide binding protein 1rkm [ ] 1jet [ ] 517

Automatic morphs
Morph Morph name Structure #1 Structure #2 Residues
va1rkmA-1b46A Mol_Id: 1; Molecule: Oligo-Pep 1rkm [ A ] 1b46 [ A ] 517
va1rkmA-1b7hA Mol_Id: 1; Molecule: Oligo-Pep 1rkm [ A ] 1b7h [ A ] 517
va1rkmA-1b9jA Mol_Id: 1; Molecule: Oligo-Pep 1rkm [ A ] 1b9j [ A ] 517
va1rkmA-1qkaA Mol_Id: 1; Molecule: Oligo-Pep 1rkm [ A ] 1qka [ A ] 517
va1rkmA-1qkbA Mol_Id: 1; Molecule: Oligo-Pep 1rkm [ A ] 1qkb [ A ] 517
va1rkmA-1b32A Mol_Id: 1; Molecule: Oligo-Pep 1rkm [ A ] 1b32 [ A ] 517
va1rkmA-2olbA Mol_Id: 1; Molecule: Oligo-Pep 1rkm [ A ] 2olb [ A ] 517
va1rkmA-1b58A Mol_Id: 1; Molecule: Oligo-Pep 1rkm [ A ] 1b58 [ A ] 517
va1b3gA-1rkmA Oligo-Peptide Binding Protein 1b3g [ A ] 1rkm [ A ] 517
va1b51A-1rkmA Oligo-Peptide Binding Protein 1b51 [ A ] 1rkm [ A ] 517
va1b3fA-1rkmA Oligo-Peptide Binding Protein 1b3f [ A ] 1rkm [ A ] 517
va1b1hA-1rkmA Oligo-Peptide Binding Protein 1b1h [ A ] 1rkm [ A ] 517
va2rkmA-1rkmA Oligo-Peptide Binding Protein 2rkm [ A ] 1rkm [ A ] 517
va1olcA-1rkmA Oligo-Peptide Binding Protein 1olc [ A ] 1rkm [ A ] 517
va1jeuA-1rkmA Oligo-Peptide Binding Protein 1jeu [ A ] 1rkm [ A ] 517
va1b40A-1rkmA Oligo-Peptide Binding Protein 1b40 [ A ] 1rkm [ A ] 517
va1b3lA-1rkmA Oligo-Peptide Binding Protein 1b3l [ A ] 1rkm [ A ] 517
va1olaA-1rkmA Oligo-Peptide Binding Protein 1ola [ A ] 1rkm [ A ] 517
va1b3lC-1rkmA Oligo-Peptide Binding Protein 1b3l [ C ] 1rkm [ A ] 517
va1jetA-1rkmA Oligo-Peptide Binding Protein 1jet [ A ] 1rkm [ A ] 517
va1b5hA-1rkmA Oligo-Peptide Binding Protein 1b5h [ A ] 1rkm [ A ] 517
va1b5iA-1rkmA Oligo-Peptide Binding Protein 1b5i [ A ] 1rkm [ A ] 517
va1b4zA-1rkmA Oligo-Peptide Binding Protein 1b4z [ A ] 1rkm [ A ] 517
va1jevA-1rkmA Oligo-Peptide Binding Protein 1jev [ A ] 1rkm [ A ] 517
va1b5jA-1rkmA Oligo-Peptide Binding Protein 1b5j [ A ] 1rkm [ A ] 517
va1b4hA-1rkmA Periplasmic Oligo-Peptide Bind 1b4h [ A ] 1rkm [ A ] 517
va1b6hA-1rkmA Periplasmic Oligo-Peptide Bind 1b6h [ A ] 1rkm [ A ] 517
va1b05A-1rkmA Periplasmic Oligopeptide-Bindi 1b05 [ A ] 1rkm [ A ] 517
va1b2hA-1rkmA Periplasmic Oligopeptide-Bindi 1b2h [ A ] 1rkm [ A ] 517
va1b0hA-1rkmA Periplasmic Oligopeptide-Bindi 1b0h [ A ] 1rkm [ A ] 517
va1b3hA-1rkmA Periplasmic Oligopeptide-Bindi 1b3h [ A ] 1rkm [ A ] 517

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Copyright 1995-2005 M. Gerstein, W. Krebs, S. Flores, N. Echols, and others
Email: Mark.Gerstein _at_ yale.edu