Motion in Calbindin [calbind]

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Classification Known Fragment Motion, Shear Mechanism [F-s-2]

Structures
1CDN Conformation 3 [ PartsList ]
1CLB Conformation 1 [ PartsList ]
4ICB Conformation 2 [ PartsList ]

Description
The structure of calbindin is characteristic of an EF-hand protein, with two helix-loop-helix calcium binding motifs joined by a flexible linker, and a short anti-parallel beta-type interaction between the two ion-binding sites. The structure of calbindin has been solved in the apo (Conformation 1), (Ca2+)(2) (Conformation 2), and (Cd2+)(1) (Conformation 3) states in x-ray and NMR studies. Upon binding of both Calcium ions to the structure, the two ion-binding loops in the structure move approximately 1.00 A together, while the pairs of helices in the structure move approximately 0.45 A together.

Particular values describing motion
Experimental Methods = xn (Traditional x-ray)
Creation Date = 19971130
Modification Date = 19971130

References
Z Jia, D Barford, A J Flint, and N K Tonks (1995). Structural Basis for Phosphotyrosine Peptide Recognition by Protein Tyrosine Phosphatase 1B. Sci. 268:1754-1758. [Medline info for 10074413]

GO terms associated with structures
Molecular functioncalcium ion binding

Morphs

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Best representative
Morph Morph name Structure #1 Structure #2 Residues
Calbindin 1clb [ A ] 4icb [ A ] 76

User-submitted morphs
Morph Morph name Structure #1 Structure #2 Residues
620044-7549 calbind 1clb [ A ] 4icb [ A ] 76
769747-23687 calbind 1clb [ A ] 4icb [ A ] 76
07354-16742 calbindin 1cdn [ ] 4icb [ ] 76
34318-16829 Calbindin 1clb [ A ] 1cdn [ A ] 76
64563-23635 Calbindin 4icb [ A ] 1clb [ A ] 76
808241-28334 calbindin 1clb [ A ] 4icb [ A ] 76
808145-28165 calbindin 1clb [ A ] 4icb [ A ] 76
98000-13820 Calcium binding 1clb [ A ] 1cdn [ A ] 76
55259-16104 Via_align 1clb [ A ] 4icb [ A ] 76


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Copyright 1995-2005 M. Gerstein, W. Krebs, S. Flores, N. Echols, and others
Email: Mark.Gerstein _at_ yale.edu