drDXS [083002-8765]

Representation Video Format Ribbon MultiGif CA trace Ball-and-Stick

---

Other visual representations: Create new custom MPEG of this morph Color protein by motion View interpolation animated in Protein Explorer (Rotate, color, render as desired. Requires PC/Mac, Chime) Color protein by nma flexibility View as Flickerbook Page in Adobe PDF 1.2 Color protein by b-factors 3D jmol viewer (NEW!)

Downloads and other analyses: Download interpolation as tar'red and gzipped PDB file Torsion angle analysis of morph Download interpolation as gzip'ped NMR format PDB file Proflex Analysis Helical interaction analysis of first or last frame.

---

Statistics generated for this morph [ help page ]

Display percentiles for rankable statistics versus morph set: check 1

Rankable statistics: 2ndCoreCAs 285 2ndCoreRMS 6.8265 2ndCoreRMSpostrefitting 6.73786 AlignedCoreCAs 286 AlignedCoreRMS 0.197839 Max2ndCoreDeviation 28.754 MaxCoreDeviation 0.306513 MaxOverallDeviation 28.754 Min2ndCoreDeviation 0.303773 MinCoreDeviation 0.0252079 MinOverallDeviation 0.0252079 RMSoverall 4.82487 kappa 2.2706 natoms 4334 nresidues 574 translation 0.507762

Other information: Hinge000X -1.50594 Hinge000Y -32.1478 Hinge000Z 8.1499 Hinge000res 460:479 Hinge000seq LYS ALA LEU ASP TYR ALA LEU LYS ALA ALA GLU ASP LEU PRO GLY VAL GLY VAL VAL ALA Hinge000x0dist 40.1728 NHingeWindow 20 NHinges 1 TransX 0.474234 TransY 0.0803753 TransZ 0.162678 hetero   inframes 2 inputchain0 T inputchain1 I inputframe0 webupload1.pdb inputframe1 webupload2.pdb max_x_or_y 44.107 movie_id 083002-8765 movie_type Yale nhetatoms   nhets 0 nresatoms 4334 outframes 10 prelimsscore nan private N protein_name drDXS submitted-by Antoine Lacour submitted-date Fri Dec 4 07:46:48 PST 2020 submitted-email alacournola@gmail.com x0ToCentroidDistance 26.6419 x0X -19.7107 x0Y -0.537393 x0Z -17.9162

---

Alignment of Protein Structures from Amino Acids in their SEQRES decks:

View alignment as nicely formated Alscript page (PDF format)

1>P1;webupload2.pdb.....1...TSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEG
2>P1;webupload1.pdb.....1.PGTSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEG

1>P1;webupload2.pdb...101.GISGFTKVSESEHDAITVGHASTSLANALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMSVNXXX
2>P1;webupload1.pdb...101.GISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMXXXXXX

1>P1;webupload2.pdb...201.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFAAMGVRYVGPVDGHNVQELVWLLERLVDLDGPTILHIVTTKGKGLSYAEADPIYWH
2>P1;webupload1.pdb...201.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDLDGPTILHIVTTKGKGLSYAEADPIYWH

1>P1;webupload2.pdb...301.GPAKFDPATGEYVPSSAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYD
2>P1;webupload1.pdb...301.GPAKFDPATGEYVPSSAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYD

1>P1;webupload2.pdb...401.QVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTHDGPFAIRYPRGNTAQVPAGTWPDLKWGEWERLKG
2>P1;webupload1.pdb...401.QVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTHDGPFAIRYPRGNTAQVPAGTWPDLKWGEWERLKG

1>P1;webupload2.pdb...501.GDDVVILAGGKALDYALKAAEDLPGVGVVXARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMNLHPTVRVLGIPDEFQEHATAESVH
2>P1;webupload1.pdb...501.GDDVVILAGGKALDYALKAAEDLPGVGVVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMNLHPTVRVLGIPDEFQEHATAESVH

1>P1;webupload2.pdb...601.ARAGIDAPAIRTVLAELGVDVP.
2>P1;webupload1.pdb...601.ARAGIDAPAIRTVLAELGVDVPI

---

Copyright 1995-2005 M. Gerstein, W. Krebs, S. Flores, N. Echols, and others
Email: Mark.Gerstein _at_ yale.edu